4UJ5 Transport Protein date Apr 08, 2015
title Crystal Structure Of Human Rab11-Rabin8-Fip3
authors M.Vetter, E.Lorentzen
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, B
Fragment: Gtpase Domain, Residues 6-186
Synonym: Rab-11, Yl8, Rab-11, Yl8, Rab11a
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Rab-3a-Interacting Protein
Chain: C, D
Fragment: C-Terminal Domain, Residues 286-476
Synonym: Rab3a-Interacting Protein, Rabin-3, Ssx2-Interacti Protein, Rab3a-Interacting Protein, Rabin-3, Ssx2-Interact Protein, Rabin8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.2146 R_Free 0.2716
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.683 108.202 75.736 90.00 102.83 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GNP, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3 and Rabin8 effectors to Rab11., Vetter M, Stehle R, Basquin C, Lorentzen E, Nat Struct Mol Biol. 2015 Aug 10. doi: 10.1038/nsmb.3065. PMID:26258637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4uj5.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (4uj5.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4UJ5
  • CSU: Contacts of Structural Units for 4UJ5
  • Structure Factors (329 Kb)
  • Retrieve 4UJ5 in mmCIF format [Save to disk]
  • Re-refined 4uj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4uj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uj5_B] [4uj5_C] [4uj5_A] [4uj5] [4uj5_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UJ5: [RAB ] by SMART
  • Other resources with information on 4UJ5
  • Community annotation for 4UJ5 at PDBWiki (http://pdbwiki.org)

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