4YDD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, F3S, GOL, MD1, MGD, MO, NA, PEG, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, D, F


E, A, C


Primary referencePerchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues., Youngblut MD, Tsai CL, Clark IC, Carlson HK, Maglaqui AP, Gau-Pan PS, Redford SA, Wong A, Tainer JA, Coates JD, J Biol Chem. 2016 Apr 22;291(17):9190-202. doi: 10.1074/jbc.M116.714618. Epub, 2016 Mar 3. PMID:26940877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1178 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydd.pdb1.gz) 397 Kb
  • Biological Unit Coordinates (4ydd.pdb2.gz) 393 Kb
  • Biological Unit Coordinates (4ydd.pdb3.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 4YDD
  • CSU: Contacts of Structural Units for 4YDD
  • Structure Factors (20736 Kb)
  • Retrieve 4YDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YDD from S2C, [Save to disk]
  • Re-refined 4ydd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydd] [4ydd_A] [4ydd_B] [4ydd_C] [4ydd_D] [4ydd_E] [4ydd_F]
  • SWISS-PROT database:

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