4Z79 Protein Binding date Apr 06, 2015
title Leiomodin-1 Actin-Binding Site 2 (Abs2)
authors G.Rebowski, M.Boczkowska, R.Dominguez
compound source
Molecule: Leiomodin-1 Actin-Binding Site 2 (Abs2)
Chain: A
Fragment: Unp Residues 299-486
Synonym: 64 Kda Autoantigen 1d,64 Kda Autoantigen 1d3,64 Kd Autoantigen D1,Leiomodin,Muscle Form,Smooth Muscle Leiomodi Thyroid-Associated Ophthalmopathy Autoantigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lmod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.177
length a length b length c angle alpha angle beta angle gamma
49.019 52.192 75.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand CL, GOL, NA enzyme

Primary referenceHow Leiomodin and Tropomodulin use a common fold for different actin assembly functions., Boczkowska M, Rebowski G, Kremneva E, Lappalainen P, Dominguez R, Nat Commun. 2015 Sep 15;6:8314. doi: 10.1038/ncomms9314. PMID:26370058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4z79.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4Z79
  • CSU: Contacts of Structural Units for 4Z79
  • Structure Factors (442 Kb)
  • Retrieve 4Z79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z79 from S2C, [Save to disk]
  • Re-refined 4z79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4z79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z79] [4z79_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Z79
  • Community annotation for 4Z79 at PDBWiki (http://pdbwiki.org)

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