5A8L Translation date Jul 16, 2015
title Human Erf1 And The Hcmv Nascent Peptide In The Translation T Complex
authors S.Matheisl, O.Berninghausen, T.Becker, R.Beckmann
compound source
Molecule: 28s Ribosomal Rna
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: Human 18s Ribosomal Rna
Chain: B

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: 60s Ribosomal Protein L17
Chain: D
Synonym: 60s Ribosomal Protein L23, Pd-1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: 60s Ribosomal Protein L12
Chain: G

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: 60s Ribosomal Protein L4
Chain: H
Synonym: 60s Ribosomal Protein L1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: P-Site Trna
Chain: P

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: Eukaryotic Release Factor Erf1
Chain: Q

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: Mrna
Chain: R

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3

Molecule: Nascent Chain
Chain: Z

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Hela S3
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
D


G


H


Q


Primary referenceStructure of a human translation termination complex., Matheisl S, Berninghausen O, Becker T, Beckmann R, Nucleic Acids Res. 2015 Oct 15;43(18):8615-26. doi: 10.1093/nar/gkv909. Epub 2015, Sep 17. PMID:26384426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (5a8l.pdb1.gz) 214 Kb
  • CSU: Contacts of Structural Units for 5A8L
  • Retrieve 5A8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A8L from S2C, [Save to disk]
  • View 5A8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5a8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a8l_G] [5a8l_H] [5a8l_D] [5a8l_A] [5a8l_B] [5a8l_Z] [5a8l_P] [5a8l_Q] [5a8l_R] [5a8l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A8L: [RL11] [eRF1_1 ] by SMART
  • Other resources with information on 5A8L
  • Community annotation for 5A8L at PDBWiki (http://pdbwiki.org)

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