OCA Atlas for 5AJ3

5AJ3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GDP, MG, P5P, Y5P, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
E
F
G
I
J
K
L
N
O
P
Q
R
U
b
c
d
f
g
h
j
k
m
o
p

Primary reference

Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome., Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N, Science. 2015 Apr 17;348(6232):303-8. doi: 10.1126/science.aaa3872. Epub 2015 Apr, 2. PMID:25837512

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1357 Kb) [Save to disk]

Biological Unit Coordinates (5aj3.pdb1.gz) 1317 Kb

LPC: Ligand-Protein Contacts for 5AJ3

CSU: Contacts of Structural Units for 5AJ3

Retrieve 5AJ3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5AJ3 from S2C, [Save to disk]

View 5AJ3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aj3] [5aj3_A] [5aj3_B] [5aj3_C] [5aj3_E] [5aj3_F] [5aj3_G] [5aj3_I] [5aj3_J] [5aj3_K] [5aj3_L] [5aj3_N] [5aj3_O] [5aj3_P] [5aj3_Q] [5aj3_R] [5aj3_T] [5aj3_U] [5aj3_V] [5aj3_X] [5aj3_Y] [5aj3_a] [5aj3_b] [5aj3_c] [5aj3_d] [5aj3_e] [5aj3_f] [5aj3_g] [5aj3_h] [5aj3_i] [5aj3_j] [5aj3_k] [5aj3_m] [5aj3_n] [5aj3_o] [5aj3_p] [5aj3_s] [5aj3_z]

SWISS-PROT database:

Domains found in 5AJ3: [DUF1713] [L51_S25_CI-B8] [Ribosomal_S10] [Ribosomal_S15] [S1 ] by SMART

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