5AOX	Translation	date	Sep 12, 2015
title	Human Alu Rna Retrotransposition Complex In The Ribosome-Sta Conformation
authors	V.Ahl, O.Weichenrieder
compound		source
Molecule: Signal Recognition Particle 9 Kda Protein Chain: A, D Fragment: Unp Residues 2-86 Synonym: Srp9 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta II Expression_system_plasmid: Pet3a
Molecule: Signal Recognition Particle 14 Kda Protein Chain: B, E Fragment: Unp Residues 2-95 Synonym: Srp14,18 Kda Alu Rna-Binding Protein, Srp14 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta II Expression_system_plasmid: Petm41
Molecule: Alu Jo Consensus Rna Chain: C, F Fragment: Alu Jo Left Truncated Monomer Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 1 2 1	R_factor 0.186 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.480 56.730 170.590 90.00 93.69 90.00
method	X-Ray Diffraction	resolution	2.04 Å
ligand	ACT, GDP, MG, PEG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D E, B
Primary reference	Retrotransposition and Crystal Structure of an Alu RNP in the Ribosome-Stalling Conformation., Ahl V, Keller H, Schmidt S, Weichenrieder O, Mol Cell. 2015 Nov 11. pii: S1097-2765(15)00770-4. doi:, 10.1016/j.molcel.2015.10.003. PMID:26585389

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (358 Kb) [Save to disk] Biological Unit Coordinates (5aox.pdb1.gz) 176 Kb Biological Unit Coordinates (5aox.pdb2.gz) 174 Kb LPC: Ligand-Protein Contacts for 5AOX CSU: Contacts of Structural Units for 5AOX Structure Factors (450 Kb) Retrieve 5AOX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AOX from S2C, [Save to disk] Re-refined 5aox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AOX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AOX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aox_F] [5aox] [5aox_B] [5aox_A] [5aox_D] [5aox_E] [5aox_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5AOX

Community annotation for 5AOX at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---