5AVI		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	4KM	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Discovery and structure-guided optimization of tert-butyl 6-(phenoxymethyl)-3-(trifluoromethyl)benzoates as liver X receptor agonists., Matsui Y, Yamaguchi T, Yamazaki T, Yoshida M, Arai M, Terasaka N, Honzumi S, Wakabayashi K, Hayashi S, Nakai D, Hanzawa H, Tamaki K, Bioorg Med Chem Lett. 2015 Sep 15;25(18):3914-20. doi:, 10.1016/j.bmcl.2015.07.047. Epub 2015 Jul 23. PMID:26238323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (5avi.pdb1.gz) 164 Kb LPC: Ligand-Protein Contacts for 5AVI CSU: Contacts of Structural Units for 5AVI Structure Factors (374 Kb) Retrieve 5AVI in mmCIF format [Save to disk] Re-refined 5avi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AVI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5avi] [5avi_A] [5avi_B] [5avi_C] [5avi_D] SWISS-PROT database: Domain found in 5AVI: [HOLI ] by SMART

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