5C5S	Signaling Protein	date	Jun 22, 2015
title	Crystal Structure Of Human Myosin 9b Rhogap Domain At 2.2 An
authors	F.S.Yi, J.Q.Ren, W.Feng
compound		source
Molecule: Unconventional Myosin-Ixb Chain: A, B, C, D Fragment: Unp Residues 1691-1916 Synonym: Unconventional Myosin-9b Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Myo9b, Myr5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.084 84.984 134.139 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Myo9b is a key player in SLIT/ROBO-mediated lung tumor suppression., Kong R, Yi F, Wen P, Liu J, Chen X, Ren J, Li X, Shang Y, Nie Y, Wu K, Fan D, Zhu L, Feng W, Wu JY, J Clin Invest. 2015 Nov 3;2015. pii: 81673. doi: 10.1172/JCI81673. PMID:26529257

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk] Biological Unit Coordinates (5c5s.pdb1.gz) 71 Kb Biological Unit Coordinates (5c5s.pdb2.gz) 69 Kb Biological Unit Coordinates (5c5s.pdb3.gz) 69 Kb Biological Unit Coordinates (5c5s.pdb4.gz) 69 Kb CSU: Contacts of Structural Units for 5C5S Structure Factors (278 Kb) Retrieve 5C5S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C5S from S2C, [Save to disk] Re-refined 5c5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C5S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C5S

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c5s_D] [5c5s_C] [5c5s_B] [5c5s] [5c5s_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5C5S: [RhoGAP ] by SMART

Other resources with information on 5C5S

Community annotation for 5C5S at PDBWiki (http://pdbwiki.org)

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