5C5S Signaling Protein date Jun 22, 2015
title Crystal Structure Of Human Myosin 9b Rhogap Domain At 2.2 An
authors F.S.Yi, J.Q.Ren, W.Feng
compound source
Molecule: Unconventional Myosin-Ixb
Chain: A, B, C, D
Fragment: Unp Residues 1691-1916
Synonym: Unconventional Myosin-9b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myo9b, Myr5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.246
length a length b length c angle alpha angle beta angle gamma
77.084 84.984 134.139 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
A, D, C, B

Primary referenceMyo9b is a key player in SLIT/ROBO-mediated lung tumor suppression., Kong R, Yi F, Wen P, Liu J, Chen X, Ren J, Li X, Shang Y, Nie Y, Wu K, Fan D, Zhu L, Feng W, Wu JY, J Clin Invest. 2015 Nov 3;2015. pii: 81673. doi: 10.1172/JCI81673. PMID:26529257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (5c5s.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (5c5s.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (5c5s.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (5c5s.pdb4.gz) 70 Kb
  • CSU: Contacts of Structural Units for 5C5S
  • Structure Factors (278 Kb)
  • Retrieve 5C5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C5S from S2C, [Save to disk]
  • Re-refined 5c5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C5S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c5s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c5s_D] [5c5s_C] [5c5s_B] [5c5s] [5c5s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C5S: [RhoGAP ] by SMART
  • Other resources with information on 5C5S
  • Community annotation for 5C5S at PDBWiki (http://pdbwiki.org)

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