OCA Atlas for 5CFE

5CFE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, PEG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A	nuclease activity endonuclease activity exonuclease activity phosphodiesterase I activity... double-stranded DNA 3'-5' ex...

Primary reference

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA., Redrejo-Rodriguez M, Vigouroux A, Mursalimov A, Grin I, Alili D, Koshenov Z, Akishev Z, Maksimenko A, Bissenbaev AK, Matkarimov BT, Saparbaev M, Ishchenko AA, Morera S, Biochimie. 2016 Jun 22. pii: S0300-9084(16)30120-1. doi:, 10.1016/j.biochi.2016.06.011. PMID:27343627

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]

Biological Unit Coordinates (5cfe.pdb1.gz) 87 Kb

LPC: Ligand-Protein Contacts for 5CFE

CSU: Contacts of Structural Units for 5CFE

Structure Factors (174 Kb)

Retrieve 5CFE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5CFE from S2C, [Save to disk]

Re-refined 5cfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CFE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cfe] [5cfe_A]

SWISS-PROT database:

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