5DT5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SO4 enzyme
Gene EAB7
Gene
Ontology
ChainFunctionProcessComponent
B, H, E, D, C, A, F, G


Primary referenceOligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7., Zanphorlin LM, de Giuseppe PO, Honorato RV, Tonoli CC, Fattori J, Crespim E, de Oliveira PS, Ruller R, Murakami MT, Sci Rep. 2016 Mar 31;6:23776. doi: 10.1038/srep23776. PMID:27029646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (839 Kb) [Save to disk]
  • Biological Unit Coordinates (5dt5.pdb1.gz) 420 Kb
  • Biological Unit Coordinates (5dt5.pdb2.gz) 419 Kb
  • Biological Unit Coordinates (5dt5.pdb3.gz) 213 Kb
  • Biological Unit Coordinates (5dt5.pdb4.gz) 214 Kb
  • Biological Unit Coordinates (5dt5.pdb5.gz) 212 Kb
  • Biological Unit Coordinates (5dt5.pdb6.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 5DT5
  • CSU: Contacts of Structural Units for 5DT5
  • Structure Factors (4363 Kb)
  • Retrieve 5DT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DT5 from S2C, [Save to disk]
  • Re-refined 5dt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dt5] [5dt5_A] [5dt5_B] [5dt5_C] [5dt5_D] [5dt5_E] [5dt5_F] [5dt5_G] [5dt5_H]
  • SWISS-PROT database:

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