5EI0 Hydrolase Inhibitor date Oct 29, 2015
title Structure Of Rcl-Cleaved Vaspin (Serpina12)
authors J.Pippel, B.E.Kuettner, D.Ulbricht, J.Daberger, S.Schultz, J.T.He N.Strater
compound source
Molecule: Serpin A12
Chain: A, E
Fragment: Unp Residues 22-414
Synonym: Ol-64,Visceral Adipose Tissue-Derived Serine Prote Inhibitor,Vaspin,Visceral Adipose-Specific Serpin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpina12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.392 104.422 62.965 90.00 96.90 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


Primary referenceCrystal structure of cleaved vaspin (serpinA12)., Pippel J, Kuettner EB, Ulbricht D, Daberger J, Schultz S, Heiker JT, Strater N, Biol Chem. 2015 Nov 3. pii:, /j/bchm.just-accepted/hsz-2015-0229/hsz-2015-0229.xml. doi:, 10.1515/hsz-2015-0229. PMID:26529565
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (5ei0.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (5ei0.pdb2.gz) 122 Kb
  • CSU: Contacts of Structural Units for 5EI0
  • Structure Factors (1578 Kb)
  • Retrieve 5EI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EI0 from S2C, [Save to disk]
  • Re-refined 5ei0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EI0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ei0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ei0_A] [5ei0] [5ei0_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EI0: [SERPIN ] by SMART
  • Other resources with information on 5EI0
  • Community annotation for 5EI0 at PDBWiki (http://pdbwiki.org)

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