5EWJ Transport Protein date Nov 20, 2015
title Crystal Structure Of Amino Terminal Domains Of The Nmda Rece Subunit Glun1 And Glun2b In Complex With Ifenprodil
authors J.Pandit
compound source
Molecule: Nmda Glutamate Receptor Subunit
Chain: A, C
Fragment: Amino Terminal Domain (Unp Residues 23-408)
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Grin1, Nr1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Glutamate Receptor Ionotropic, Nmda 2b
Chain: B, D
Fragment: Amino Terminal Domain (Unp Residues 31-394)
Synonym: Glun2b,Glutamate [Nmda] Receptor Subunit Epsilon-2 D-Aspartate Receptor Subtype 2b,Nr2b,N-Methyl-D-Aspartate R Subunit 3,Hnr3;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin2b, Nmdar2b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.174 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
268.460 60.100 145.000 90.00 116.22 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand BMA, MAN, NA, NAG, QEL enzyme
Primary referenceA novel binding mode reveals two distinct classes of NMDA receptor GluN2B-selective antagonists., Stroebel D, Buhl DL, Knafels JD, Chanda PK, Green M, Sciabola S, Mony L, Paoletti P, Pandit J, Mol Pharmacol. 2016 Feb 24. pii: mol.115.103036. PMID:26912815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk]
  • Biological Unit Coordinates (5ewj.pdb1.gz) 239 Kb
  • Biological Unit Coordinates (5ewj.pdb2.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 5EWJ
  • CSU: Contacts of Structural Units for 5EWJ
  • Structure Factors (1491 Kb)
  • Retrieve 5EWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EWJ from S2C, [Save to disk]
  • Re-refined 5ewj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ewj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ewj_A] [5ewj_B] [5ewj_D] [5ewj_C] [5ewj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EWJ
  • Community annotation for 5EWJ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science