5HDN Transcription date Jan 05, 2016
title Crystal Structure Of Heat Shock Factor1-Dbd Complex With Ds- Ttt
authors H.Feng, W.Liu, D.C.Wang
compound source
Molecule: Heat Shock Factor Protein 1
Chain: A, B, C, D
Fragment: Unp Residues 15-120
Synonym: Hsf 1,Heat Shock Transcription Factor 1,Hstf 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf1, Hstf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpgptptpcptpapgpapapcpc)-3'
Chain: E, F, G, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.174 R_Free 0.202
length a length b length c angle alpha angle beta angle gamma
39.415 127.367 55.268 90.00 100.55 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand CIT, NA enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (5hdn.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (5hdn.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 5HDN
  • CSU: Contacts of Structural Units for 5HDN
  • Structure Factors (1011 Kb)
  • Retrieve 5HDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HDN from S2C, [Save to disk]
  • Re-refined 5hdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HDN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hdn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hdn_H] [5hdn] [5hdn_C] [5hdn_E] [5hdn_B] [5hdn_D] [5hdn_F] [5hdn_A] [5hdn_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HDN
  • Community annotation for 5HDN at PDBWiki (http://pdbwiki.org)

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