5HKY Ligase date Jan 14, 2016
title Crystal Structure Of C-Cbl Tkbd Domain In Complex With Spry2 (36-60, Py55) Refined To 1.8a Resolution (P6 Form)
authors S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cbl
Chain: A
Fragment: Tyrosine Kinase Binding Domain (Tkbd), Residues 4
Synonym: Casitas B-Lineage Lymphoma Proto-Oncogene,Proto-On Cbl,Ring Finger Protein 55,Signal Transduction Protein Cbl;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbl, Cbl2, Rnf55
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Plyses-Rare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptbsg

Molecule: Protein Sprouty Homolog 2
Chain: B
Fragment: Unp Residues 36-60
Synonym: Spry-2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthesized By New England Peptide With An A N-Terminus
symmetry Space Group: P 6
R_factor 0.157 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.810 122.810 58.440 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand 1PE, CL, NA, PTR enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5hky.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5HKY
  • CSU: Contacts of Structural Units for 5HKY
  • Structure Factors (3240 Kb)
  • Retrieve 5HKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HKY from S2C, [Save to disk]
  • Re-refined 5hky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HKY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hky from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hky_B] [5hky_A] [5hky]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HKY
  • Community annotation for 5HKY at PDBWiki (http://pdbwiki.org)

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