5HPY Gene Regulation Signaling Protein date Jan 21, 2016
title Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Human Myo Rhogap Domain
authors F.S.Yi, J.Q.Ren, W.Feng
compound source
Molecule: Unconventional Myosin-Ixb
Chain: A, D
Synonym: Unconventional Myosin-9b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myo9b, Myr5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Transforming Protein Rhoa
Chain: B, F
Fragment: Unp Residues 3-181
Synonym: Rho Cdna Clone 12,H12
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoa, Arh12, Arha, Rho12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 2
R_factor 0.211 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.055 90.762 93.582 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GDP, MG, MGF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


F, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (5hpy.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (5hpy.pdb2.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 5HPY
  • CSU: Contacts of Structural Units for 5HPY
  • Structure Factors (464 Kb)
  • Retrieve 5HPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HPY from S2C, [Save to disk]
  • Re-refined 5hpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hpy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hpy] [5hpy_D] [5hpy_F] [5hpy_B] [5hpy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HPY: [RHO] [RhoGAP ] by SMART
  • Other resources with information on 5HPY
  • Community annotation for 5HPY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science