5J5J Cell Adhesion date Apr 02, 2016
title Crystal Structure Of A Chimera Of Human Desmocollin-2 Ec1 An Desmoglein-2 Ec2-Ec5
authors J.Brasch, O.J.Harrison, L.Shapiro
compound source
Molecule: Desmocollin-2,Desmoglein-2
Chain: A
Fragment: Unp Residues 136-235; Unp Residues 152-601
Synonym: Cadherin Family Member 2,Desmocollin-3,Desmosomal Glycoprotein II,Desmosomal Glycoprotein III,Cadherin Family Hdgc;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dsc2, Cdhf2, Dsc3, Dsg2, Cdhf5
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 2 21 21
R_factor 0.247 R_Free 0.285
length a length b length c angle alpha angle beta angle gamma
63.494 87.489 218.536 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.29 Å
ligand BMA, CA, CL, FUC, GAL, MAN, NAG enzyme

Primary referenceStructural basis of adhesive binding by desmocollins and desmogleins., Harrison OJ, Brasch J, Lasso G, Katsamba PS, Ahlsen G, Honig B, Shapiro L, Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7160-5. doi:, 10.1073/pnas.1606272113. Epub 2016 Jun 13. PMID:27298358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (5j5j.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 5J5J
  • CSU: Contacts of Structural Units for 5J5J
  • Structure Factors (242 Kb)
  • Retrieve 5J5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J5J from S2C, [Save to disk]
  • Re-refined 5j5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j5j] [5j5j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5J5J: [CA ] by SMART
  • Other resources with information on 5J5J
  • Community annotation for 5J5J at PDBWiki (http://pdbwiki.org)

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