5JIR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, GOL enzyme
Genes TPANIC, TP
Primary referenceThe Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains., Parker ML, Houston S, Wetherell C, Cameron CE, Boulanger MJ, PLoS One. 2016 Nov 10;11(11):e0166274. doi: 10.1371/journal.pone.0166274., eCollection 2016. PMID:27832149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5jir.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (5jir.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (5jir.pdb3.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 5JIR
  • CSU: Contacts of Structural Units for 5JIR
  • Structure Factors (2129 Kb)
  • Retrieve 5JIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JIR from S2C, [Save to disk]
  • Re-refined 5jir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jir] [5jir_A] [5jir_B]
  • SWISS-PROT database:

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