5KZ8 Transferase Transferase Inhibitor date Jul 23, 2016
title Mark2 Complex With 7-[(1s)-1-(4-Fluorophenyl)Ethyl]-5,5-Dime Pyridylamino)Pyrrolo[2,3-D]Pyrimidin-6-One
authors H.P.Su, S.K.Munshi
compound source
Molecule: Serinethreonine-Protein Kinase Mark2
Chain: A, B
Fragment: Unp Residues 6-331
Synonym: Elkl Motif Kinase 1,Emk-1,Mapmicrotubule Affinity Regulating Kinase 2,Par1 Homolog,Par1 Homolog B,Par1b;
Ec: 2.7.11.1,2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mark2, Emk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.219 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.416 120.416 99.457 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.21 Å
ligand 6Z5 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (5kz8.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5kz8.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5KZ8
  • CSU: Contacts of Structural Units for 5KZ8
  • Structure Factors (369 Kb)
  • Retrieve 5KZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KZ8 from S2C, [Save to disk]
  • Re-refined 5kz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kz8_A] [5kz8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KZ8
  • Community annotation for 5KZ8 at PDBWiki (http://pdbwiki.org)

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