5LXG Membrane Protein date Sep 21, 2016
title Revised Crystal Structure Of The Human Adiponectin Receptor Open Conformation
authors C.Leyrat, I.Vasiliauskaite-Brooks, S.Granier
compound source
Molecule: Adiponectin Receptor Protein 1
Chain: A
Synonym: Progestin And Adipoq Receptor Family Member I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adipor1, Paqr1, Tesbp1a, Cgi-45
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: V Region Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: E.Coli Cell-Free Protein Synthesis

Molecule: V Region Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: E.Coli Cell-Free Protein Synthesis
symmetry Space Group: C 2 2 21
R_factor 0.225 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.310 194.110 74.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.73 Å
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into adiponectin receptors suggest ceramidase activity., Vasiliauskaite-Brooks I, Sounier R, Rochaix P, Bellot G, Fortier M, Hoh F, De Colibus L, Bechara C, Saied EM, Arenz C, Leyrat C, Granier S, Nature. 2017 Mar 22. doi: 10.1038/nature21714. PMID:28329765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxg.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 5LXG
  • CSU: Contacts of Structural Units for 5LXG
  • Structure Factors (306 Kb)
  • Retrieve 5LXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXG from S2C, [Save to disk]
  • Re-refined 5lxg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LXG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lxg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxg_L] [5lxg_H] [5lxg] [5lxg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LXG
  • Community annotation for 5LXG at PDBWiki (http://pdbwiki.org)

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