5MGX Isomerase date Nov 22, 2016
title The Structure Of Fkbp38 In Complex With The Meevd Tetratrico Binding-Motif Of Hsp90
authors S.M.Roe, K.L.Blundell, C.Prodromou
compound source
Molecule: Yeast Hsp90 C-Terminus
Chain: A, B, C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp8
Chain: E, F, G, H
Synonym: Ppiase Fkbp8,38 Kda Fk506-Binding Protein,Hfkbp38, Binding Protein 8,Fkbp-8,Fkbpr38,Rotamase;
Ec: 5.2.1.8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp8, Fkbp38
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.290 105.640 100.190 90.00 93.10 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, F, G, E


Primary referenceThe structure of FKBP38 in complex with the MEEVD tetratricopeptide binding-motif of Hsp90., Blundell KL, Pal M, Roe SM, Pearl LH, Prodromou C, PLoS One. 2017 Mar 9;12(3):e0173543. doi: 10.1371/journal.pone.0173543., eCollection 2017. PMID:28278223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (5mgx.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (5mgx.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (5mgx.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (5mgx.pdb4.gz) 50 Kb
  • Biological Unit Coordinates (5mgx.pdb5.gz) 50 Kb
  • Biological Unit Coordinates (5mgx.pdb6.gz) 50 Kb
  • Biological Unit Coordinates (5mgx.pdb7.gz) 45 Kb
  • CSU: Contacts of Structural Units for 5MGX
  • Structure Factors (3274 Kb)
  • Retrieve 5MGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MGX from S2C, [Save to disk]
  • Re-refined 5mgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MGX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mgx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mgx_F] [5mgx_D] [5mgx_B] [5mgx_G] [5mgx_H] [5mgx_E] [5mgx_A] [5mgx_C] [5mgx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MGX
  • Community annotation for 5MGX at PDBWiki (http://pdbwiki.org)

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