5MGX	Isomerase	date	Nov 22, 2016
title	The Structure Of Fkbp38 In Complex With The Meevd Tetratrico Binding-Motif Of Hsp90
authors	S.M.Roe, K.L.Blundell, C.Prodromou
compound		source
Molecule: Yeast Hsp90 C-Terminus Chain: A, B, C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp8 Chain: E, F, G, H Synonym: Ppiase Fkbp8,38 Kda Fk506-Binding Protein,Hfkbp38, Binding Protein 8,Fkbp-8,Fkbpr38,Rotamase; Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fkbp8, Fkbp38 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 1 21 1	R_factor 0.246 R_Free 0.308
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.290 105.640 100.190 90.00 93.10 90.00
method	X-Ray Diffraction	resolution	2.18 Å
ligand		enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component H, F, G, E
Primary reference	The structure of FKBP38 in complex with the MEEVD tetratricopeptide binding-motif of Hsp90., Blundell KL, Pal M, Roe SM, Pearl LH, Prodromou C, PLoS One. 2017 Mar 9;12(3):e0173543. doi: 10.1371/journal.pone.0173543., eCollection 2017. PMID:28278223

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (5mgx.pdb1.gz) 47 Kb Biological Unit Coordinates (5mgx.pdb2.gz) 47 Kb Biological Unit Coordinates (5mgx.pdb3.gz) 49 Kb Biological Unit Coordinates (5mgx.pdb4.gz) 49 Kb Biological Unit Coordinates (5mgx.pdb5.gz) 49 Kb Biological Unit Coordinates (5mgx.pdb6.gz) 49 Kb Biological Unit Coordinates (5mgx.pdb7.gz) 44 Kb CSU: Contacts of Structural Units for 5MGX Structure Factors (3274 Kb) Retrieve 5MGX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MGX from S2C, [Save to disk] Re-refined 5mgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MGX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MGX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mgx_F] [5mgx_D] [5mgx_B] [5mgx_G] [5mgx_H] [5mgx_E] [5mgx_A] [5mgx_C] [5mgx] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5MGX

Community annotation for 5MGX at PDBWiki (http://pdbwiki.org)

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