5MR5 Signaling Protein date Dec 21, 2016
title Ligand-Receptor Complex.
authors J.Sandmark, L.Oster, A.Aagaard, R.Roth, G.Dahl
compound source
Molecule: Neurturin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrtn
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gdnf Family Receptor Alpha-2
Chain: C, D
Synonym: Gfr-Alpha-2,Gdnf Receptor Beta,Gdnfr-Beta,Neurturi Alpha,Ntnr-Alpha,Ret Ligand 2,Tgf-Beta-Related Neurotrophic Receptor 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gfra2, Gdnfrb, Retl2, Trnr2
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
52.070 120.300 78.670 90.00 98.46 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, SO4 enzyme
A, B

D, C

Primary referenceStructure and biophysical characterisation of the human full-length Neurturin-GFRa2 complex - a role for heparan sulfate in signalling., Sandmark J, Dahl G, Oster L, Xu B, Johansson P, Akerud T, Aagaard A, Davidsson P, Bigalke JM, Sorhede-Winzell M, Rainey GJ, Roth RG, J Biol Chem. 2018 Feb 2. pii: RA117.000820. doi: 10.1074/jbc.RA117.000820. PMID:29414779
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (5mr5.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 5MR5
  • CSU: Contacts of Structural Units for 5MR5
  • Structure Factors (1728 Kb)
  • Retrieve 5MR5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MR5 from S2C, [Save to disk]
  • View 5MR5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MR5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mr5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mr5_C] [5mr5_D] [5mr5_B] [5mr5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MR5
  • Community annotation for 5MR5 at PDBWiki (http://pdbwiki.org)

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