OCA Atlas for 5MYV

5MYV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DMS, SO4, W4A

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, B, A, C

Primary reference

Development of Potent, Selective SRPK1 Inhibitors as Potential Topical Therapeutics for Neovascular Eye Disease., Batson J, Toop HD, Redondo C, Babaei-Jadidi R, Chaikuad A, Wearmouth SF, Gibbons B, Allen C, Tallant C, Zhang J, Du C, Hancox JC, Hawtrey T, Da Rocha J, Griffith R, Knapp S, Bates DO, Morris JC, ACS Chem Biol. 2017 Mar 17;12(3):825-832. doi: 10.1021/acschembio.6b01048. Epub, 2017 Feb 6. PMID:28135068

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (493 Kb) [Save to disk]

Biological Unit Coordinates (5myv.pdb1.gz) 125 Kb

Biological Unit Coordinates (5myv.pdb2.gz) 124 Kb

Biological Unit Coordinates (5myv.pdb3.gz) 123 Kb

Biological Unit Coordinates (5myv.pdb4.gz) 126 Kb

LPC: Ligand-Protein Contacts for 5MYV

CSU: Contacts of Structural Units for 5MYV

Structure Factors (7343 Kb)

Retrieve 5MYV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5MYV from S2C, [Save to disk]

Re-refined 5myv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MYV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5myv] [5myv_A] [5myv_B] [5myv_C] [5myv_D]

SWISS-PROT database:

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