5MZV Cytokine date Feb 01, 2017
title Il-23:Il-23r:Nb22e11 Complex
authors Y.Bloch, S.N.Savvides
compound source
Molecule: Interleukin-12 Subunit Beta
Chain: A
Synonym: Il-12b,Cytotoxic Lymphocyte Maturation Factor 40 K Subunit,Clmf P40,Il-12 Subunit P40,Nk Cell Stimulatory Fact 2,Nksf2;
Engineered: Yes
Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 22 And 23;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il12b, Nksf2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Mgat1-- Tetr
Expression_system_vector_type: Linearized Plasmid
Expression_system_plasmid: Pcdna4to

Molecule: Interleukin-23 Subunit Alpha
Chain: B
Synonym: Il-23-A,Interleukin-23 Subunit P19,Il-23p19
Engineered: Yes
Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 27 And 28;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il23a, Sgrf, Unq2498pro5798
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Mgat1-- Tetr
Expression_system_vector_type: Linearized Plasmid
Expression_system_plasmid: Pcdna4to

Molecule: Interleukin-23 Receptor
Chain: C
Synonym: Il-23r
Engineered: Yes
Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 23 And 24;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il23r
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Mgat1-- Tetr
Expression_system_vector_type: Linearized Plasmid
Expression_system_plasmid: Pcdna4to

Molecule: Nanobody 22e11
Chain: D
Engineered: Yes
Other_details: The Pelb Secretion Signal Is Likely Cleaved Between Residues -1 And 1

Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Wk6
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmecs
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.219 112.190 109.870 90.00 106.24 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand BMA, CL, MAN, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural Activation of Pro-inflammatory Human Cytokine IL-23 by Cognate IL-23 Receptor Enables Recruitment of the Shared Receptor IL-12Rbeta1., Bloch Y, Bouchareychas L, Merceron R, Skladanowska K, Van den Bossche L, Detry S, Govindarajan S, Elewaut D, Haerynck F, Dullaers M, Adamopoulos IE, Savvides SN, Immunity. 2017 Dec 21. pii: S1074-7613(17)30537-X. doi:, 10.1016/j.immuni.2017.12.008. PMID:29287995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (434 Kb) [Save to disk]
  • Biological Unit Coordinates (5mzv.pdb1.gz) 422 Kb
  • LPC: Ligand-Protein Contacts for 5MZV
  • CSU: Contacts of Structural Units for 5MZV
  • Structure Factors (325 Kb)
  • Retrieve 5MZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MZV from S2C, [Save to disk]
  • View 5MZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 5MZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mzv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mzv_B] [5mzv_D] [5mzv_C] [5mzv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MZV
  • Community annotation for 5MZV at PDBWiki (http://pdbwiki.org)

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