5MZV	Cytokine	date	Feb 01, 2017
title	Il-23:Il-23r:Nb22e11 Complex
authors	Y.Bloch, S.N.Savvides
compound		source
Molecule: Interleukin-12 Subunit Beta Chain: A Synonym: Il-12b,Cytotoxic Lymphocyte Maturation Factor 40 K Subunit,Clmf P40,Il-12 Subunit P40,Nk Cell Stimulatory Fact 2,Nksf2; Engineered: Yes Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 22 And 23;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Il12b, Nksf2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Mgat1-- Tetr Expression_system_vector_type: Linearized Plasmid Expression_system_plasmid: Pcdna4to
Molecule: Interleukin-23 Subunit Alpha Chain: B Synonym: Il-23-A,Interleukin-23 Subunit P19,Il-23p19 Engineered: Yes Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 27 And 28;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Il23a, Sgrf, Unq2498pro5798 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Mgat1-- Tetr Expression_system_vector_type: Linearized Plasmid Expression_system_plasmid: Pcdna4to
Molecule: Interleukin-23 Receptor Chain: C Synonym: Il-23r Engineered: Yes Other_details: The Native Secretion Signal Is Likely Cleave Between Residues 23 And 24;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Il23r Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Mgat1-- Tetr Expression_system_vector_type: Linearized Plasmid Expression_system_plasmid: Pcdna4to
Molecule: Nanobody 22e11 Chain: D Engineered: Yes Other_details: The Pelb Secretion Signal Is Likely Cleaved Between Residues -1 And 1		Organism_scientific: Lama Glama Organism_common: Llama Organism_taxid: 9844 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Wk6 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmecs
symmetry	Space Group: P 1 21 1	R_factor 0.212 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.219 112.190 109.870 90.00 106.24 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	BMA, CL, MAN, NA, NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural Activation of Pro-inflammatory Human Cytokine IL-23 by Cognate IL-23 Receptor Enables Recruitment of the Shared Receptor IL-12Rbeta1., Bloch Y, Bouchareychas L, Merceron R, Skladanowska K, Van den Bossche L, Detry S, Govindarajan S, Elewaut D, Haerynck F, Dullaers M, Adamopoulos IE, Savvides SN, Immunity. 2017 Dec 21. pii: S1074-7613(17)30537-X. doi:, 10.1016/j.immuni.2017.12.008. PMID:29287995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (434 Kb) [Save to disk] Biological Unit Coordinates (5mzv.pdb1.gz) 422 Kb LPC: Ligand-Protein Contacts for 5MZV CSU: Contacts of Structural Units for 5MZV Structure Factors (325 Kb) Retrieve 5MZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MZV from S2C, [Save to disk]

View 5MZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MZV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mzv_B] [5mzv_D] [5mzv_C] [5mzv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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