5NJ6 Membrane Protein date Mar 28, 2017
title Crystal Structure Of A Thermostabilised Human Protease-Activ Receptor-2 (Par2) In Ternary Complex With Fab3949 And Az718 Angstrom Resolution
authors R.K.Y.Cheng, C.Fiez-Vandal, O.Schlenker, K.Edman, B.Aggeler, D.G. G.Brown, R.M.Cooke, C.E.Dumelin, A.S.Dore, S.Geschwindner, C.Gre O.Hermansson, A.Jazayeri, P.Johansson, L.Leong, R.Prihandoko, M. H.Soutter, A.Snijder, L.Sundstrom, B.Tehan, P.Thornton, D.Troast G.Wiggin, A.Zhukov, F.H.Marshall, N.Dekker
compound source
Molecule: Proteinase-Activated Receptor 2,Soluble Cytochrom Proteinase-Activated Receptor 2;
Chain: A
Synonym: Par-2,Coagulation Factor II Receptor-Like 1,G-Prot Coupled Receptor 11,Thrombin Receptor-Like 1,Cytochrome B-5 Coagulation Factor II Receptor-Like 1,G-Protein Coupled Rec Thrombin Receptor-Like 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: F2rl1, Gpr11, Par2, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_plasmid: Pfastbac

Molecule: Fab3949 H
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Fab3949 L
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
symmetry Space Group: P 21 21 2
R_factor 0.263 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.144 38.520 159.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into allosteric modulation of protease-activated receptor 2., Cheng RKY, Fiez-Vandal C, Schlenker O, Edman K, Aggeler B, Brown DG, Brown GA, Cooke RM, Dumelin CE, Dore AS, Geschwindner S, Grebner C, Hermansson NO, Jazayeri A, Johansson P, Leong L, Prihandoko R, Rappas M, Soutter H, Snijder A, Sundstrom L, Tehan B, Thornton P, Troast D, Wiggin G, Zhukov A, Marshall FH, Dekker N, Nature. 2017 Apr 26. doi: 10.1038/nature22309. PMID:28445455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5nj6.pdb1.gz) 132 Kb
  • CSU: Contacts of Structural Units for 5NJ6
  • Structure Factors (93 Kb)
  • Retrieve 5NJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NJ6 from S2C, [Save to disk]
  • Re-refined 5nj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NJ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nj6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nj6] [5nj6_A] [5nj6_L] [5nj6_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NJ6
  • Community annotation for 5NJ6 at PDBWiki (http://pdbwiki.org)

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