5NVM Translation date May 04, 2017
title Crystal Structure Of The Human 4ehp-Gigyf2 Complex Lacking T Auxiliary Sequences
authors D.Peter, E.Valkov
compound source
Molecule: Eukaryotic Translation Initiation Factor 4e Type
Chain: A, C
Synonym: Eif4e Type 2,Eukaryotic Translation Initiation Fac Homologous Protein,Eukaryotic Translation Initiation Factor 3,Eif4e-Like Protein 4e-Lp,Mrna Cap-Binding Protein 4ehp,H4 Cap-Binding Protein Type 3;
Engineered: Yes
Other_details: The First Six Residues Of The Coordinate Seq Belong To The Expression Tag;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4e2, Eif4el3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Star

Molecule: Grb10-Interacting Gyf Protein 2
Chain: B, D
Synonym: Perq Amino Acid-Rich With Gyf Domain-Containing Pr Trinucleotide Repeat-Containing Gene 15 Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gigyf2, Kiaa0642, Perq2, Tnrc15
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
152.210 98.590 39.280 90.00 99.59 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PO4 enzyme
A, C

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5nvm.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (5nvm.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5NVM
  • CSU: Contacts of Structural Units for 5NVM
  • Structure Factors (355 Kb)
  • Retrieve 5NVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NVM from S2C, [Save to disk]
  • Re-refined 5nvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NVM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nvm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nvm_B] [5nvm_C] [5nvm_D] [5nvm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NVM
  • Community annotation for 5NVM at PDBWiki (http://pdbwiki.org)

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