5O74 Hydrolase date Jun 08, 2017
title Crystal Structure Of Human Rab1b Covalently Bound To The Gef Drrasidm From Legionella Pneumophila In The Presence Of Gd
authors M.Cigler, T.Mueller, D.Horn-Ghetko, M.K.Von Wrisberg, M.Fottner, R.S.Goody, A.Itzen, M.P.Mueller, K.Lang
compound source
Molecule: Multifunctional Virulence Effector Protein Drra
Chain: A, C, E, G, I, K
Synonym: Defects In Rab1 Recruitment Protein A
Ec: 2.7.7.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Legionella Pneumophila
Organism_taxid: 446
Gene: Drra, Sidm
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ras-Related Protein Rab-1b
Chain: B, D, F, H, J, L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.229 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.910 87.450 93.170 114.61 97.69 100.74
method X-Ray Diffractionresolution 2.50 Å
ligand 9MN, GDP enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceProximity-triggered covalent stabilization of low-affinity protein complexes in vitro and in vivo., Cigler M, Muller TG, Horn-Ghetko D, von Wrisberg MK, Fottner M, Goody RS, Itzen A, Muller MP, Lang K, Angew Chem Int Ed Engl. 2017 Sep 28. doi: 10.1002/anie.201706927. PMID:28960788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1049 Kb) [Save to disk]
  • Biological Unit Coordinates (5o74.pdb1.gz) 180 Kb
  • Biological Unit Coordinates (5o74.pdb2.gz) 176 Kb
  • Biological Unit Coordinates (5o74.pdb3.gz) 178 Kb
  • Biological Unit Coordinates (5o74.pdb4.gz) 181 Kb
  • Biological Unit Coordinates (5o74.pdb5.gz) 179 Kb
  • Biological Unit Coordinates (5o74.pdb6.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 5O74
  • CSU: Contacts of Structural Units for 5O74
  • Structure Factors (599 Kb)
  • Retrieve 5O74 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O74 from S2C, [Save to disk]
  • View 5O74 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O74
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5o74 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o74_A] [5o74_J] [5o74_G] [5o74_L] [5o74_C] [5o74_B] [5o74_E] [5o74_I] [5o74_F] [5o74_D] [5o74_H] [5o74_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O74
  • Community annotation for 5O74 at PDBWiki (http://pdbwiki.org)

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