5ODS Cell Cycle date Jul 06, 2017
title Structure Of A Phosphoprotein-Protein Complex
authors M.Mukherjee, R.Bayliss
compound source
Molecule: Clathrin Heavy Chain 1
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cltc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lys-Glu-Ser-Ala-Leu-Arg-Lys-Gln-Sep-Leu-Tyr-Leu-L Asp-Pro-Leu-Leu;
Chain: E, F, G, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.269
length a length b length c angle alpha angle beta angle gamma
115.520 120.040 123.130 90.00 95.72 90.00
method X-Ray Diffractionresolution 3.09 Å
ligand SEP enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (795 Kb) [Save to disk]
  • Biological Unit Coordinates (5ods.pdb1.gz) 201 Kb
  • Biological Unit Coordinates (5ods.pdb2.gz) 201 Kb
  • Biological Unit Coordinates (5ods.pdb3.gz) 197 Kb
  • Biological Unit Coordinates (5ods.pdb4.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5ODS
  • CSU: Contacts of Structural Units for 5ODS
  • Structure Factors (1666 Kb)
  • Retrieve 5ODS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ODS from S2C, [Save to disk]
  • View 5ODS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ODS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ods from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ods_H] [5ods_A] [5ods_C] [5ods_G] [5ods_F] [5ods_D] [5ods_E] [5ods_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ODS
  • Community annotation for 5ODS at PDBWiki (http://pdbwiki.org)

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