5OY0 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 45D, ACT, BCR, CA, CL, CLA, DGD, ECH, EQ3, LHG, LMG, LMT, MG, PQN, SF4, SQD, ZEX enzyme
Gene
Ontology
ChainFunctionProcessComponent
3, C, c


8, K, k


9, m, M


A, a, 1
  • electron transfer activity


  • D, d, 4


    I, h, i


    J, 7, j


    b, B, 2
  • electron transfer activity


  • e, 5, E


    f, 6, F


    l, L, 0


    Primary referenceStructure and function of wild-type and subunit-depleted photosystem I in Synechocystis., Malavath T, Caspy I, Netzer-El SY, Klaiman D, Nelson N, Biochim Biophys Acta. 2018 Feb 4. pii: S0005-2728(18)30018-5. doi:, 10.1016/j.bbabio.2018.02.002. PMID:29414678
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2730 Kb) [Save to disk]
  • Biological Unit Coordinates (5oy0.pdb1.gz) 2550 Kb
  • LPC: Ligand-Protein Contacts for 5OY0
  • CSU: Contacts of Structural Units for 5OY0
  • Structure Factors (11305 Kb)
  • Retrieve 5OY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OY0 from S2C, [Save to disk]
  • View 5OY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OY0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oy0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oy0_a] [5oy0_0] [5oy0_1] [5oy0_2] [5oy0_3] [5oy0_4] [5oy0_5] [5oy0_6] [5oy0_7] [5oy0_M] [5oy0_8] [5oy0_9] [5oy0_A] [5oy0_B] [5oy0_C] [5oy0_D] [5oy0_E] [5oy0_F] [5oy0_I] [5oy0_J] [5oy0_K] [5oy0_L] [5oy0_b] [5oy0_c] [5oy0_d] [5oy0_e] [5oy0_f] [5oy0_h] [5oy0_i] [5oy0_j] [5oy0_k] [5oy0_l] [5oy0_m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OY0
  • Community annotation for 5OY0 at PDBWiki (http://pdbwiki.org)

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