OCA Atlas for 5SWW

5SWW

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, B, A, C	cytidine deaminase activity

Primary reference

Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B., Shi K, Carpenter MA, Banerjee S, Shaban NM, Kurahashi K, Salamango DJ, McCann JL, Starrett GJ, Duffy JV, Demir O, Amaro RE, Harki DA, Harris RS, Aihara H, Nat Struct Mol Biol. 2016 Dec 19. doi: 10.1038/nsmb.3344. PMID:27991903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]

Biological Unit Coordinates (5sww.pdb1.gz) 68 Kb

Biological Unit Coordinates (5sww.pdb2.gz) 68 Kb

Biological Unit Coordinates (5sww.pdb3.gz) 69 Kb

Biological Unit Coordinates (5sww.pdb4.gz) 69 Kb

LPC: Ligand-Protein Contacts for 5SWW

CSU: Contacts of Structural Units for 5SWW

Structure Factors (305 Kb)

Retrieve 5SWW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5SWW from S2C, [Save to disk]

Re-refined 5sww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SWW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sww] [5sww_A] [5sww_B] [5sww_C] [5sww_D] [5sww_E] [5sww_F] [5sww_G] [5sww_H]

SWISS-PROT database:

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