5SYT Hydrolase, Membrane Protein date Aug 11, 2016
title Crystal Structure Of Zmpste24
authors K.Clark, J.L.Jenkins, N.Fedoriw, M.E.Dumont, Membrane Protein St Biology Consortium (Mpsbc)
compound source
Molecule: Caax Prenyl Protease 1 Homolog
Chain: A
Synonym: Farnesylated Proteins-Converting Enzyme 1, Face-1, Protein-Specific Endoprotease 1, Zinc Metalloproteinase Ste Homolog;
Ec: 3.4.24.84
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zmpste24, Face1, Ste24
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj5460
Expression_system_atcc_number: 208285
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.455 84.560 76.885 90.00 119.07 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand C8E, CXE, DMS, GOL, PC1, PEG, SO4, ZN enzyme Hydrolase E.C.3.4.24.84 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman CaaX Protease ZMPSTE24 Expressed in Yeast: Structure and Inhibition by HIV Protease Inhibitors., Clark KM, Jenkins JL, Fedoriw N, Dumont ME, Protein Sci. 2016 Oct 24. doi: 10.1002/pro.3074. PMID:27774687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5syt.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 5SYT
  • CSU: Contacts of Structural Units for 5SYT
  • Structure Factors (1757 Kb)
  • Retrieve 5SYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SYT from S2C, [Save to disk]
  • Re-refined 5syt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5SYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5SYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5syt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5syt_A] [5syt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5SYT
  • Community annotation for 5SYT at PDBWiki (http://pdbwiki.org)

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