5TUV	Transcription	date	Nov 07, 2016
title	Crystal Structure Of The E2f5-Dp1-P107 Ternary Complex
authors	T.J.Liban, S.M.Tripathi, S.M.Rubin
compound		source
Molecule: Transcription Factor Dp1 Chain: A, D Fragment: Unp Residues 199-350 Synonym: Drtf1-Polypeptide 1,Drtf1,E2f Dimerization Partner Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tfdp1, Dp1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Transcription Factor E2f5 Chain: B, E Fragment: Unp Residues 124-232 Synonym: E2f-5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: E2f5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Retinoblastoma-Like Protein 1 Chain: C, F Fragment: Unp Residues 994-1031 Synonym: 107 Kda Retinoblastoma-Associated Protein,P107,Prb Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rbl1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 1 21 1	R_factor 0.212 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.980 57.340 99.198 90.00 96.64 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family., Liban TJ, Medina EM, Tripathi S, Sengupta S, Henry RW, Buchler NE, Rubin SM, Proc Natl Acad Sci U S A. 2017 Apr 24. pii: 201619170. doi:, 10.1073/pnas.1619170114. PMID:28439018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk] Biological Unit Coordinates (5tuv.pdb1.gz) 80 Kb Biological Unit Coordinates (5tuv.pdb2.gz) 71 Kb Biological Unit Coordinates (5tuv.pdb3.gz) 149 Kb CSU: Contacts of Structural Units for 5TUV Structure Factors (151 Kb) Retrieve 5TUV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TUV from S2C, [Save to disk] Re-refined 5tuv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TUV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TUV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tuv] [5tuv_F] [5tuv_B] [5tuv_C] [5tuv_A] [5tuv_D] [5tuv_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5TUV at PDBWiki (http://pdbwiki.org)

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