5UV8 Signaling Protein date Feb 19, 2017
title Interleukin-3 Receptor Complex
authors S.E.Broughton, M.W.Parker
compound source
Molecule: Interleukin-3 Receptor Subunit Alpha
Chain: A, G
Fragment: Unp Residues 20-307
Synonym: Il-3ra
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il3ra, Il3r
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Interleukin-3
Chain: B, I
Fragment: Unp Residues 31-152
Synonym: Il-3,Hematopoietic Growth Factor,Mast Cell Growth Mcgf,Multipotential Colony-Stimulating Factor,P-Cell-Stimul Factor;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.242 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.039 132.039 210.631 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BMA, FUC, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, G


I, B


Primary referenceA dual role for the N-terminal domain of the IL-3 receptor in cell signalling., Broughton SE, Hercus TR, Nero TL, Kan WL, Barry EF, Dottore M, Cheung Tung Shing KS, Morton CJ, Dhagat U, Hardy MP, Wilson NJ, Downton MT, Schieber C, Hughes TP, Lopez AF, Parker MW, Nat Commun. 2018 Jan 26;9(1):386. doi: 10.1038/s41467-017-02633-7. PMID:29374162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (5uv8.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (5uv8.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5UV8
  • CSU: Contacts of Structural Units for 5UV8
  • Structure Factors (904 Kb)
  • Retrieve 5UV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UV8 from S2C, [Save to disk]
  • View 5UV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UV8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uv8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uv8_B] [5uv8_I] [5uv8_A] [5uv8_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UV8
  • Community annotation for 5UV8 at PDBWiki (http://pdbwiki.org)

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