5V84 Transcription Inhibitor date Mar 21, 2017
title Cecr2 In Complex With Cpd6 (6-Allyl-N,2-Dimethyl-7-Oxo-N-(1- Phenylethyl)Piperidin-4-Yl)-6,7-Dihydro-1h-Pyrrolo[2,3-C]Py Carboxamide)
authors J.M.Murray, J.R.Kiefer, H.Jayaran, S.Bellon, F.Boy
compound source
Molecule: Cat Eye Syndrome Critical Region Protein 2
Chain: A, B, C, D
Fragment: Unp Residues 404-518
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cecr2, Kiaa1740
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.206 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.184 116.488 132.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 96V, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceGNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2)., Crawford TD, Audia JE, Bellon S, Burdick DJ, Bommi-Reddy A, Cote A, Cummings RT, Duplessis M, Flynn EM, Hewitt M, Huang HR, Jayaram H, Jiang Y, Joshi S, Kiefer JR, Murray J, Nasveschuk CG, Neiss A, Pardo E, Romero FA, Sandy P, Sims RJ 3rd, Tang Y, Taylor AM, Tsui V, Wang J, Wang S, Wang Y, Xu Z, Zawadzke L, Zhu X, Albrecht BK, Magnuson SR, Cochran AG, ACS Med Chem Lett. 2017 Jun 1;8(7):737-741. doi: 10.1021/acsmedchemlett.7b00132. , eCollection 2017 Jul 13. PMID:28740608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (5v84.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 5V84
  • CSU: Contacts of Structural Units for 5V84
  • Structure Factors (638 Kb)
  • Retrieve 5V84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V84 from S2C, [Save to disk]
  • Re-refined 5v84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V84
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v84 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v84_A] [5v84_D] [5v84_C] [5v84_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V84
  • Community annotation for 5V84 at PDBWiki (http://pdbwiki.org)

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