5VZD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	2KH, EDO, EPE, MG, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu., Moon AF, Pryor JM, Ramsden DA, Kunkel TA, Bebenek K, Pedersen LC, Nucleic Acids Res. 2017 Sep 6;45(15):9138-9148. doi: 10.1093/nar/gkx527. PMID:28911097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (5vzd.pdb1.gz) 133 Kb LPC: Ligand-Protein Contacts for 5VZD CSU: Contacts of Structural Units for 5VZD Structure Factors (548 Kb) Retrieve 5VZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VZD from S2C, [Save to disk] Re-refined 5vzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vzd_A] [5vzd_D] [5vzd_P] [5vzd_T] SWISS-PROT database:

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