5YWY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 7UR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLigand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface., Toyoda Y, Morimoto K, Suno R, Horita S, Yamashita K, Hirata K, Sekiguchi Y, Yasuda S, Shiroishi M, Shimizu T, Urushibata Y, Kajiwara Y, Inazumi T, Hotta Y, Asada H, Nakane T, Shiimura Y, Nakagita T, Tsuge K, Yoshida S, Kuribara T, Hosoya T, Sugimoto Y, Nomura N, Sato M, Hirokawa T, Kinoshita M, Murata T, Takayama K, Yamamoto M, Narumiya S, Iwata S, Kobayashi T, Nat Chem Biol. 2019 Jan;15(1):18-26. doi: 10.1038/s41589-018-0131-3. Epub 2018, Dec 3. PMID:30510193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (5ywy.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 5YWY
  • CSU: Contacts of Structural Units for 5YWY
  • Structure Factors (471 Kb)
  • Retrieve 5YWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YWY from S2C, [Save to disk]
  • View 5YWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ywy_A] [5ywy_H] [5ywy_L]
  • SWISS-PROT database:

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