5Z8Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, FUC, NAG, ZN enzyme
Primary referenceStructural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction., Yamagata A, Goto-Ito S, Sato Y, Shiroshima T, Maeda A, Watanabe M, Saitoh T, Maenaka K, Terada T, Yoshida T, Uemura T, Fukai S, Nat Commun. 2018 Sep 27;9(1):3964. doi: 10.1038/s41467-018-06333-8. PMID:30262834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (684 Kb) [Save to disk]
  • Biological Unit Coordinates (5z8y.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (5z8y.pdb2.gz) 173 Kb
  • Biological Unit Coordinates (5z8y.pdb3.gz) 172 Kb
  • Biological Unit Coordinates (5z8y.pdb4.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 5Z8Y
  • CSU: Contacts of Structural Units for 5Z8Y
  • Structure Factors (521 Kb)
  • Retrieve 5Z8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z8Y from S2C, [Save to disk]
    • View 5Z8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z8y_A] [5z8y_B] [5z8y_C] [5z8y_D] [5z8y_E] [5z8y_F] [5z8y_G] [5z8y_H]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science