5ZCK Protein Fibril date Feb 18, 2018
title Structure Of The Rip3 Core Region
authors J.Li, H.Wu
compound source
Molecule: Peptide From Receptor-Interacting Serinethreonin Kinase 3;
Chain: A
Synonym: Rip-3 Core Region
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.137 R_Free 0.153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
4.813 17.151 29.564 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.27 Å
ligand NA enzyme
Primary referenceThe Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex., Mompean M, Li W, Li J, Laage S, Siemer AB, Bozkurt G, Wu H, McDermott AE, Cell. 2018 May 17;173(5):1244-1253.e10. doi: 10.1016/j.cell.2018.03.032. Epub, 2018 Apr 19. PMID:29681455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4 Kb) [Save to disk]
  • Biological Unit Coordinates (5zck.pdb1.gz) 1 Kb
  • LPC: Ligand-Protein Contacts for 5ZCK
  • CSU: Contacts of Structural Units for 5ZCK
  • Structure Factors (18 Kb)
  • Retrieve 5ZCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZCK from S2C, [Save to disk]
  • View 5ZCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZCK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zck from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zck_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZCK
  • Community annotation for 5ZCK at PDBWiki (http://pdbwiki.org)

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