6AGI Calcium Binding Protein date Aug 11, 2018
title Crystal Structure Of Efha2 In Ca-Binding State
authors X.Yangfei, Y.Xue, S.Yuequan
compound source
Molecule: Calcium Uptake Protein 3, Mitochondrial
Chain: A, B
Synonym: Ef-Hand Domain-Containing Family Member A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Micu3, Efha2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Codon Plus
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.387 77.177 172.669 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA, IMD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (6agi.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 6AGI
  • CSU: Contacts of Structural Units for 6AGI
  • Structure Factors (154 Kb)
  • Retrieve 6AGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AGI from S2C, [Save to disk]
  • View 6AGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AGI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6agi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6agi_A] [6agi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AGI
  • Community annotation for 6AGI at PDBWiki (http://pdbwiki.org)

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