6BGN Isomerase date Oct 29, 2017
title Crystal Structure Of 4-Oxalocrotonate Tautomerase After Incu With 5-Fluoro-2-Hydroxy-2,4-Pentadienoate
authors Y.Zhang, W.Li, T.Stack
compound source
Molecule: 2-Hydroxymuconate Tautomerase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Synonym: 4-Oxalocrotonate Tautomerase,4-Ot
Ec: 5.3.2.6
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_common: Arthrobacter Siderocapsulatus
Organism_taxid: 303
Gene: Xylh
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12
symmetry Space Group: C 1 2 1
R_factor 0.116 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.413 88.011 112.674 90.00 98.26 90.00
method X-Ray Diffractionresolution 1.51 Å
ligand 6Y5, GOL, NO3 enzyme Isomerase E.C.5.3.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceInactivation of 4-Oxalocrotonate Tautomerase by 5-Halo-2-hydroxy-2,4-pentadienoates., Stack TMM, Li W, Johnson WH Jr., Zhang YJ, Whitman CP, Biochemistry. 2018 Feb 13;57(6):1012-1021. doi: 10.1021/acs.biochem.7b00899. Epub, 2018 Jan 24. PMID:29303557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (6bgn.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (6bgn.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb4.gz) 28 Kb
  • Biological Unit Coordinates (6bgn.pdb5.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb6.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb7.gz) 28 Kb
  • Biological Unit Coordinates (6bgn.pdb8.gz) 27 Kb
  • Biological Unit Coordinates (6bgn.pdb9.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 6BGN
  • CSU: Contacts of Structural Units for 6BGN
  • Structure Factors (2788 Kb)
  • Retrieve 6BGN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BGN from S2C, [Save to disk]
  • View 6BGN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BGN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bgn_E] [6bgn_K] [6bgn_B] [6bgn_L] [6bgn_A] [6bgn_I] [6bgn_J] [6bgn_C] [6bgn_M] [6bgn_D] [6bgn_G] [6bgn_N] [6bgn_H] [6bgn_F] [6bgn_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BGN
  • Community annotation for 6BGN at PDBWiki (http://pdbwiki.org)

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