6BGN Crystal Structure of 4-Oxalocrotonate Tautomerase After Incubation with 5-Fluoro-2-hydroxy-2,4-pentadienoate date
authors Zhang, Y., Li, W., Stack, T.
compound source
symmetry
R_factor
R_Free 0.1694
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.51
ligand 6Y5, GOL, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceInactivation of 4-Oxalocrotonate Tautomerase by 5-Halo-2-hydroxy-2,4-pentadienoates., Stack TMM, Li W, Johnson WH Jr., Zhang YJ, Whitman CP, Biochemistry. 2018 Feb 13;57(6):1012-1021. doi: 10.1021/acs.biochem.7b00899. Epub, 2018 Jan 24. PMID:29303557
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (6bgn.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (6bgn.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb4.gz) 28 Kb
  • Biological Unit Coordinates (6bgn.pdb5.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb6.gz) 26 Kb
  • Biological Unit Coordinates (6bgn.pdb7.gz) 28 Kb
  • Biological Unit Coordinates (6bgn.pdb8.gz) 27 Kb
  • Biological Unit Coordinates (6bgn.pdb9.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 6BGN
  • CSU: Contacts of Structural Units for 6BGN
  • Structure Factors (2788 Kb)
  • Retrieve 6BGN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BGN from S2C, [Save to disk]
    • View 6BGN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BGN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bgn_E] [6bgn_K] [6bgn_B] [6bgn_L] [6bgn_A] [6bgn_I] [6bgn_J] [6bgn_C] [6bgn_M] [6bgn_D] [6bgn_G] [6bgn_N] [6bgn_H] [6bgn_F] [6bgn_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BGN
  • Community annotation for 6BGN at PDBWiki (http://pdbwiki.org)

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