6BH8 Hydrolase date Oct 30, 2017
title Crystal Structure Of Zmpste24 In Complex With Phosphoramidon
authors B.R.Goblirsch, B.T.Arachea, M.C.Wiener
compound source
Molecule: Caax Prenyl Protease 1 Homolog
Chain: A, B
Synonym: Farnesylated Proteins-Converting Enzyme 1,Face-1,P Protein-Specific Endoprotease 1,Zinc Metalloproteinase Ste2
Ec: 3.4.24.84
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zmpste24, Face1, Ste24
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Bj5460
Expression_system_plasmid: Psgp47
symmetry Space Group: P 1 21 1
R_factor 0.338 R_Free 0.371
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.329 84.661 132.017 90.00 96.26 90.00
method X-Ray Diffractionresolution 3.85 Å
ligand C8E, RDF, ZN enzyme Hydrolase E.C.3.4.24.84 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePhosphoramidon inhibits the integral membrane protein zinc metalloprotease ZMPSTE24., Goblirsch BR, Arachea BT, Councell DJ, Wiener MC, Acta Crystallogr D Struct Biol. 2018 Aug 1;74(Pt 8):739-747. doi:, 10.1107/S2059798318003431. Epub 2018 Jul 24. PMID:30082509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (6bh8.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (6bh8.pdb2.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 6BH8
  • CSU: Contacts of Structural Units for 6BH8
  • Structure Factors (343 Kb)
  • Retrieve 6BH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BH8 from S2C, [Save to disk]
  • View 6BH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BH8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bh8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bh8_B] [6bh8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BH8
  • Community annotation for 6BH8 at PDBWiki (http://pdbwiki.org)

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