6BTE Transferase,Lyase Dna date Dec 06, 2017
title Dna Polymerase Beta I260q Binary Complex
authors B.E.Eckenroth, S.Doublie
compound source
Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Dna Template Strand
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna Primer Strand
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna Downstream Strand
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.942 80.568 55.133 90.00 107.92 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, IOD, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceI260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity., Liptak C, Mahmoud MM, Eckenroth BE, Moreno MV, East K, Alnajjar KS, Huang J, Towle-Weicksel JB, Doublie S, Loria JP, Sweasy JB, Nucleic Acids Res. 2018 Sep 17. pii: 5098607. doi: 10.1093/nar/gky825. PMID:30239932
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (6bte.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 6BTE
  • CSU: Contacts of Structural Units for 6BTE
  • Structure Factors (1043 Kb)
  • Retrieve 6BTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BTE from S2C, [Save to disk]
  • View 6BTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BTE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bte from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bte_D] [6bte_A] [6bte_P] [6bte_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BTE
  • Community annotation for 6BTE at PDBWiki (http://pdbwiki.org)

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