6C24 Gene Regulation date Jan 06, 2018
title Cryo-Em Structure Of Prc2 Bound To Cofactors Aebp2 And Jarid Extended Active State
authors V.Kasinath, M.Faini, S.Poepsel, D.Reif, A.Feng, G.Stjepanovic, R.A E.Nogales
compound source
Molecule: Polycomb Protein Suz12
Chain: A, M, Q
Synonym: Chromatin Precipitated E2f Target 9 Protein,Chet 9 Joined To Jazf1 Protein,Suppressor Of Zeste 12 Protein Homo
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Suz12, Chet9, Jjaz1, Kiaa0160
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Protein Jumonji
Chain: B
Synonym: Jumonjiarid Domain-Containing Protein 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jarid2, Jmj
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Protein Jumonji
Chain: E
Synonym: Jumonjiarid Domain-Containing Protein 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jarid2, Jmj
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Histone-Lysine N-Methyltransferase Ezh2
Chain: K, C
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6;
Ec: 2.1.1.43
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ezh2, Kmt6
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Polycomb Protein Eed
Chain: L
Synonym: Heed,Embryonic Ectoderm Development Protein,Wd Pro Associating With Integrin Cytoplasmic Tails 1,Wait-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Histone-Binding Protein Rbbp4
Chain: N
Synonym: Chromatin Assembly Factor 1 Subunit C,Caf-1 Subuni Chromatin Assembly Factor I P48 Subunit,Caf-I P48,Nucleosom Remodeling Factor Subunit Rbap48,Retinoblastoma-Binding Pro Rbbp-4,Retinoblastoma-Binding Protein P48;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp4, Rbap48
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Jarid2-Substrate
Chain: O
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Zinc Finger Protein Aebp2
Chain: P
Synonym: Adipocyte Enhancer-Binding Protein 2,Ae-Binding Pr
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aebp2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Suz12
Chain: Z
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand M3L enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, Q, M
  • histone methyltransferase ac...


  • C, K


    L
  • histone methyltransferase ac...


  • N


    Primary referenceStructures of human PRC2 with its cofactors AEBP2 and JARID2., Kasinath V, Faini M, Poepsel S, Reif D, Feng XA, Stjepanovic G, Aebersold R, Nogales E, Science. 2018 Jan 18. pii: science.aar5700. doi: 10.1126/science.aar5700. PMID:29348366
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (6c24.pdb1.gz) 276 Kb
  • LPC: Ligand-Protein Contacts for 6C24
  • CSU: Contacts of Structural Units for 6C24
  • Retrieve 6C24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C24 from S2C, [Save to disk]
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  • Visual 3D analysis of 6C24
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6c24 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c24_A] [6c24_N] [6c24_Q] [6c24_B] [6c24_M] [6c24_L] [6c24_C] [6c24_E] [6c24_P] [6c24_Z] [6c24_K] [6c24_O]
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  • Community annotation for 6C24 at PDBWiki (http://pdbwiki.org)

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