6CDS Signaling Protein date Feb 09, 2018
title Human Neurofibromin 2merlinschwannomin Residues 1-339 In C With Pip2
authors K.Chinthalapudi, A.J.Sharff, G.Bricogne, T.Izard
compound source
Molecule: Merlin
Chain: A, B
Synonym: Moesin-Ezrin-Radixin-Like Protein,Neurofibromin-2, Schwannomerlin,Schwannomin;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf2, Sch
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Ril
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.310 96.590 106.450 90.00 99.32 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand GOL, PEG, PIO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLipid binding promotes the open conformation and tumor-suppressive activity of neurofibromin 2., Chinthalapudi K, Mandati V, Zheng J, Sharff AJ, Bricogne G, Griffin PR, Kissil J, Izard T, Nat Commun. 2018 Apr 6;9(1):1338. doi: 10.1038/s41467-018-03648-4. PMID:29626191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (6cds.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (6cds.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 6CDS
  • CSU: Contacts of Structural Units for 6CDS
  • Structure Factors (349 Kb)
  • Retrieve 6CDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CDS from S2C, [Save to disk]
  • View 6CDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CDS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cds from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cds_B] [6cds_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CDS
  • Community annotation for 6CDS at PDBWiki (http://pdbwiki.org)

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