6DDA Transcription date May 09, 2018
title Nurr1 Covalently Modified By A Dopamine Metabolite
authors J.M.Bruning, Y.Wang, F.Otrabella, T.Boxue, H.Liu, P.Bhattacharya, J.M.Holton, R.J.Fletterick, M.P.Jacobson, P.M.England
compound source
Molecule: Nuclear Receptor Subfamily 4 Group A Member 2
Chain: B, C
Synonym: Immediate-Early Response Protein Not,Orphan Nuclea Nurr1,Transcriptionally-Inducible Nuclear Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a2, Not, Nurr1, Tinur
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Subfamily 4 Group A Member 2
Chain: A
Synonym: Immediate-Early Response Protein Not,Orphan Nuclea Nurr1,Transcriptionally-Inducible Nuclear Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a2, Not, Nurr1, Tinur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.250 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.586 80.586 225.805 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand BR, G7J, K, OCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCovalent Modification and Regulation of the Nuclear Receptor Nurr1 by a Dopamine Metabolite., Bruning JM, Wang Y, Oltrabella F, Tian B, Kholodar SA, Liu H, Bhattacharya P, Guo S, Holton JM, Fletterick RJ, Jacobson MP, England PM, Cell Chem Biol. 2019 Feb 16. pii: S2451-9456(19)30036-4. doi:, 10.1016/j.chembiol.2019.02.002. PMID:30853418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (6dda.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (6dda.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (6dda.pdb3.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 6DDA
  • CSU: Contacts of Structural Units for 6DDA
  • Structure Factors (374 Kb)
  • Retrieve 6DDA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DDA from S2C, [Save to disk]
  • View 6DDA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DDA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dda from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dda_C] [6dda_A] [6dda_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DDA
  • Community annotation for 6DDA at PDBWiki (http://pdbwiki.org)

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