6DS5 Lipid Binding Protein date Jun 13, 2018
title Cryo Em Structure Of Human Seipin
authors R.H.Yan, H.W.Qian, N.Yan, H.Y.Yang
compound source
Molecule: Seipin
Chain: A, B, C, D, E, F, G, H, I, J, K
Synonym: Bernardinelli-Seip Congenital Lipodystrophy Type 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bscl2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G


Primary referenceHuman SEIPIN Binds Anionic Phospholipids., Yan R, Qian H, Lukmantara I, Gao M, Du X, Yan N, Yang H, Dev Cell. 2018 Oct 22;47(2):248-256.e4. doi: 10.1016/j.devcel.2018.09.010. Epub, 2018 Oct 4. PMID:30293840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (6ds5.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 6DS5
  • CSU: Contacts of Structural Units for 6DS5
  • Retrieve 6DS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DS5 from S2C, [Save to disk]
  • View 6DS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DS5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ds5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ds5_C] [6ds5_B] [6ds5_H] [6ds5_K] [6ds5_A] [6ds5_E] [6ds5_G] [6ds5_I] [6ds5_D] [6ds5_F] [6ds5_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DS5
  • Community annotation for 6DS5 at PDBWiki (http://pdbwiki.org)

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