6E5B Hydrolase date Jul 19, 2018
title Human Immunoproteasome 20s Particle In Complex With Compound
authors S.Steinbacher, M.Augustin, M.Blaesse, S.F.Harris
compound source
Molecule: Proteasome Subunit Alpha Type-2
Chain: A, O
Synonym: Macropain Subunit C3,Multicatalytic Endopeptidase Subunit C3,Proteasome Component C3;
Ec: 3.4.25.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-4
Chain: B, P
Synonym: Macropain Subunit C9,Multicatalytic Endopeptidase Subunit C9,Proteasome Component C9,Proteasome Subunit L;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-7
Chain: C, Q
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-5
Chain: D, R
Synonym: Macropain Zeta Chain,Multicatalytic Endopeptidase Zeta Chain,Proteasome Zeta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-1
Chain: E, S
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-3
Chain: F, T
Synonym: Macropain Subunit C8,Multicatalytic Endopeptidase Subunit C8,Proteasome Component C8;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-6
Chain: G, U
Synonym: 27 Kda Prosomal Protein,P27k,Macropain Iota Chain, Multicatalytic Endopeptidase Complex Iota Chain,Proteasome Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-10
Chain: H, V
Synonym: Low Molecular Mass Protein 10,Macropain Subunit Me Multicatalytic Endopeptidase Complex Subunit Mecl-1,Proteas 1,Proteasome Subunit Beta-2i;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-3
Chain: I, W
Synonym: Proteasome Chain 13,Proteasome Component C10-II,Pr Theta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-2
Chain: J, X
Synonym: Macropain Subunit C7-I,Multicatalytic Endopeptidas Subunit C7-I,Proteasome Component C7-I;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-8
Chain: K, Y
Synonym: Low Molecular Mass Protein 7,Macropain Subunit C13 Multicatalytic Endopeptidase Complex Subunit C13,Proteasome C13,Proteasome Subunit Beta-5i,Really Interesting New Gene Protein;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-1
Chain: L, Z
Synonym: Macropain Subunit C5,Multicatalytic Endopeptidase Subunit C5,Proteasome Component C5,Proteasome Gamma Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-4
Chain: M, a
Synonym: 26 Kda Prosomal Protein,Pros-26,Macropain Beta Cha Multicatalytic Endopeptidase Complex Beta Chain,Proteasome Chain,Proteasome Chain 3,Hsn3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-9
Chain: N, b
Synonym: Low Molecular Mass Protein 2,Macropain Chain 7, Multicatalytic Endopeptidase Complex Chain 7,Proteasome Cha Proteasome Subunit Beta-1i,Really Interesting New Gene 12 P
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.248 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.573 203.142 161.487 90.00 106.82 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand HUJ, NA, SCN enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O


D, R


F, T


G, U
  • positive regulation of NF-ka...

  • J, X


    K, Y


    N, b


    P, B


    Q, C


    S, E


    V, H


    W, I


    Z, L


    a, M


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1002 Kb) [Save to disk]
  • Biological Unit Coordinates (6e5b.pdb1.gz) 989 Kb
  • LPC: Ligand-Protein Contacts for 6E5B
  • CSU: Contacts of Structural Units for 6E5B
  • Structure Factors (4200 Kb)
  • Retrieve 6E5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E5B from S2C, [Save to disk]
  • View 6E5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E5B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e5b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e5b_F] [6e5b_T] [6e5b_D] [6e5b_C] [6e5b_S] [6e5b_J] [6e5b_K] [6e5b_R] [6e5b_G] [6e5b_V] [6e5b_B] [6e5b_I] [6e5b_E] [6e5b_W] [6e5b_H] [6e5b_X] [6e5b_L] [6e5b_U] [6e5b_M] [6e5b_a] [6e5b_N] [6e5b_b] [6e5b_Z] [6e5b_O] [6e5b_Y] [6e5b_A] [6e5b_P] [6e5b_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E5B
  • Community annotation for 6E5B at PDBWiki (http://pdbwiki.org)

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