6G0P Transcription date Mar 19, 2018
title Crystal Structure Of The First Bromodomain Of Human Brd4 In With An Acetylated E2f1 Peptide (K117ack120ac)
authors P.Filippakopoulos, S.Picaud, T.Krojer, F.Sorrell, A.C.W.Pike, F.V C.H.Arrowsmith, A.M.Edwards, C.Bountra
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A
Synonym: Protein Hunk1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Transcription Factor E2f1
Chain: B
Synonym: E2f-1,Pbr3,Retinoblastoma-Associated Protein 1,Rba Retinoblastoma-Binding Protein 3,Rbbp-3,Prb-Binding Protein
Engineered: Yes
Other_details: E2f1 Peptide Acetylated At K117 And K120

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.125 R_Free 0.147
length a length b length c angle alpha angle beta angle gamma
44.137 53.358 58.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ALY, EDO enzyme
Primary referenceInteractome Rewiring Following Pharmacological Targeting of BET Bromodomains., Lambert JP, Picaud S, Fujisawa T, Hou H, Savitsky P, Uuskula-Reimand L, Gupta GD, Abdouni H, Lin ZY, Tucholska M, Knight JDR, Gonzalez-Badillo B, St-Denis N, Newman JA, Stucki M, Pelletier L, Bandeira N, Wilson MD, Filippakopoulos P, Gingras AC, Mol Cell. 2018 Dec 13. pii: S1097-2765(18)30948-1. doi:, 10.1016/j.molcel.2018.11.006. PMID:30554943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (6g0p.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 6G0P
  • CSU: Contacts of Structural Units for 6G0P
  • Structure Factors (2214 Kb)
  • Retrieve 6G0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6G0P from S2C, [Save to disk]
  • View 6G0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6G0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6g0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6g0p_A] [6g0p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6G0P
  • Community annotation for 6G0P at PDBWiki (http://pdbwiki.org)

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