6I9S Signaling Protein date Nov 25, 2018
title Hrobo2 Extracellular Domains 2-3
authors R.Barak, N.M.Isupov, Y.Opatowsky
compound source
Molecule: Roundabout Homolog 2
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Robo2, Kiaa1568
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.220 70.520 97.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand NA enzyme
Primary referenceStructural Principles in Robo Activation and Auto-inhibition., Barak R, Yom-Tov G, Guez-Haddad J, Gasri-Plotnitsky L, Maimon R, Cohen-Berkman M, McCarthy AA, Perlson E, Henis-Korenblit S, Isupov MN, Opatowsky Y, Cell. 2019 Mar 4. pii: S0092-8674(19)30153-9. doi: 10.1016/j.cell.2019.02.004. PMID:30853216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (6i9s.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (6i9s.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 6I9S
  • CSU: Contacts of Structural Units for 6I9S
  • Structure Factors (610 Kb)
  • Retrieve 6I9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I9S from S2C, [Save to disk]
  • View 6I9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I9S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6i9s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i9s_A] [6i9s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I9S
  • Community annotation for 6I9S at PDBWiki (http://pdbwiki.org)

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