6IY6 Translation date Dec 13, 2018
title Crystal Structure Of Human Cytosolic Aspartyl-Trna Synthetas Complex With Glutathion-S Transferase (Gst) Domains From Am Trna Synthase Complex-Interacting Multifunctional Protein 2 And Glutamyl-Prolyl-Trna Synthetase (Eprs)
authors S.H.Park, H.Hahn, B.W.Han
compound source
Molecule: Aspartate--Trna Ligase, Cytoplasmic
Chain: A, B, G, H
Synonym: Aspartyl-Trna Synthetase,Asprs,Cell Proliferation- Gene 40 Protein;
Ec: 6.1.1.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dars, Pig40
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Aminoacyl Trna Synthase Complex-Interacting Multi Protein 2;
Chain: C, D, I, J
Synonym: Multisynthase Complex Auxiliary Component P38,Prot
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aimp2, Jtv1, Pro0992
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bifunctional Glutamateproline--Trna Ligase
Chain: E, F, K, L
Synonym: Bifunctional Aminoacyl-Trna Synthetase,Cell Prolif Inducing Gene 32 Protein,Glutamatyl-Prolyl-Trna Synthetase;
Ec: 6.1.1.17,6.1.1.15
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eprs, Glns, Pars, Qars, Qprs, Pig32
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.237 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.068 108.068 815.642 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.60 Å
ligand PO4, ZN enzyme Ligase E.C.6.1.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, A, G, B


J, D, C, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (508 Kb) [Save to disk]
  • Biological Unit Coordinates (6iy6.pdb1.gz) 254 Kb
  • Biological Unit Coordinates (6iy6.pdb2.gz) 252 Kb
  • LPC: Ligand-Protein Contacts for 6IY6
  • CSU: Contacts of Structural Units for 6IY6
  • Structure Factors (910 Kb)
  • Retrieve 6IY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IY6 from S2C, [Save to disk]
  • View 6IY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6IY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6iy6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6iy6_D] [6iy6_K] [6iy6_G] [6iy6_F] [6iy6_E] [6iy6_C] [6iy6_H] [6iy6_J] [6iy6_L] [6iy6_A] [6iy6_I] [6iy6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6IY6
  • Community annotation for 6IY6 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science