6JAT Transferase date Jan 25, 2019
title Crystal Structure Of Setd3 Bound To Actin Peptide And Sfg
authors H.Li, Y.Zheng
compound source
Molecule: Histone-Lysine N-Methyltransferase Setd3
Chain: A, C
Fragment: Setd3 Protein
Synonym: Set Domain-Containing Protein 3
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setd3, C14orf154
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psumoh10

Molecule: Actin, Gamma-Enteric Smooth Muscle
Chain: B, D
Fragment: Actin Peptide
Synonym: Alpha-Actin-3,Gamma-2-Actin,Smooth Muscle Gamma-Ac
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesized Peptide 60-81
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.434 131.282 175.153 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand EPE, SFG, SO4 enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (6jat.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (6jat.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 6JAT
  • CSU: Contacts of Structural Units for 6JAT
  • Structure Factors (745 Kb)
  • Retrieve 6JAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JAT from S2C, [Save to disk]
  • View 6JAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6jat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jat_B] [6jat_C] [6jat_A] [6jat_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JAT
  • Community annotation for 6JAT at PDBWiki (http://pdbwiki.org)

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